Chemistry 化学

Fluorescence Spectrum Discussion Examples | How to Interpret Excitation Wavelength, Emission Intensity, and Quenching

In fluorescence spectrum measurements, a sample is irradiated with light of a specific wavelength, and the light emitted when excited molecules return to the ground state is measured.
By examining fluorescence intensity, excitation wavelength, emission wavelength, emission maximum, Stokes shift, quenching, and other factors, the electronic state, concentration, surrounding environment, and interactions of molecules can be discussed.

In a discussion of fluorescence spectra, it is not sufficient simply to write that “it emitted light,” “the emission intensity was high,” or “quenching occurred.”
It is necessary to consider which excitation wavelength was used, where the emission maximum is located, how fluorescence intensity depends on concentration and environment, why quenching occurred, and whether there are effects from the inner-filter effect or oxygen.

This article clearly explains, as examples of discussions that can be used in fluorescence-spectrum laboratory reports, how to interpret excitation wavelength, fluorescence intensity, and quenching, how to read fluorescence spectra, concentration dependence, Stokes shift, sources of error, and points for improvement.

Note:
This article is a reference intended to assist with discussions of fluorescence spectra obtained in instrumental-analysis experiments, physical-chemistry experiments, biochemistry experiments, and materials-chemistry experiments at universities and similar institutions.
For the actual excitation wavelength, emission-wavelength range, slit width, measurement concentration, cell, solvent, pH, instrument conditions, and safety precautions, always follow the instructions in your university’s laboratory manual and those given by your instructor or TA.

  1. What Is a Fluorescence Spectrum?
  2. Main Items to Include in the Results
    1. Main Items to Include in the Results
  3. Reference Experimental Values and Analysis Examples for Fluorescence Spectra
    1. Reference Experimental Conditions
    2. Main Items Examined in Fluorescence Measurement
    3. Changes in Fluorescence Intensity With Excitation Wavelength
    4. Example Measurement of an Emission Spectrum
    5. Example Calculation of the Stokes Shift
    6. Relationship Between Concentration and Fluorescence Intensity
    7. Example Calculation of the Concentration of an Unknown Sample
    8. Example Calculation Including the Dilution Factor
    9. Decrease in Fluorescence Intensity at High Concentration
    10. Fluorescence Quenching Caused by Addition of a Quencher
    11. Example Calculation of the Quenching Percentage
    12. Changes in Fluorescence Intensity With pH
    13. Changes in Emission Wavelength Caused by the Solvent
    14. Changes in Fluorescence Intensity With Temperature
    15. Example of Blank Correction
    16. Changes in Fluorescence Intensity Caused by Measurement Conditions
    17. Example of How to Write the Results
    18. Points for Connecting the Results to the Discussion
    19. Example Discussion
    20. Summary
  4. What Is Excitation Wavelength?
  5. What Are Emission Wavelength and Emission Maximum?
  6. What Is Fluorescence Intensity?
  7. Difference Between Excitation Spectra and Emission Spectra
  8. Discussion of the Stokes Shift
  9. Relationship Between Concentration and Fluorescence Intensity
  10. Discussion of Fluorescence Calibration Curves
  11. What Is Quenching?
  12. Discussion of Dynamic Quenching
  13. Discussion of Static Quenching
  14. Quenching by Oxygen
  15. Discussion of Concentration Quenching
  16. Discussion of the Inner-Filter Effect
  17. Discussion of Self-Absorption
  18. Effect of pH
  19. Effect of the Solvent
  20. Effect of Temperature
  21. Discussion When Fluorescence Intensity Increases
  22. Discussion When Fluorescence Intensity Decreases
  23. Discussion of Scattering Peaks
  24. Discussion of Blank Measurements
  25. Effects of the Cell and Measurement Conditions
  26. When Fluorescence-Spectrum Results Can Be Considered Good
  27. Example Discussion When the Experiment Did Not Go Well
  28. How to Write Points for Improvement
    1. Improvements to Sample Preparation
    2. Improvements to Measurement Conditions
    3. Improvements Related to Quenching and Concentration
    4. Improvements to Analysis
  29. Difference Between a Superficial Discussion and a Good Discussion
  30. Examples of Expressions That Can Be Used in Reports
  31. Points to Check When Discussing Fluorescence Spectra
  32. Summary

What Is a Fluorescence Spectrum?

A fluorescence spectrum is a graph in which the intensity of fluorescence emitted from a sample when it is irradiated with excitation light is measured at each wavelength.
Generally, the emission wavelength is plotted on the horizontal axis and fluorescence intensity on the vertical axis.
A fluorescent molecule absorbs light and enters an excited state, then loses part of its energy before emitting light and returning to the ground state.

A fluorescence spectrum contains information about the electronic state, molecular structure, solvent environment, pH, concentration, and intermolecular interactions of a molecule.
In particular, fluorescence intensity is sensitive to concentration and the presence or absence of quenching substances, so it is used for trace analysis and evaluation of molecular environments.

Example Discussion:
In a fluorescence spectrum, light emitted when molecules that have absorbed excitation light return from the excited state to the ground state is observed.
Because an emission peak was confirmed in this experiment, a fluorescent component is considered to be present in the sample.
Because the emission wavelength and fluorescence intensity are affected by the electronic state of the molecule and its surrounding environment, they provide clues for evaluating the properties of the sample.

Main Items to Include in the Results

In fluorescence-spectrum results, organize the sample name, concentration, solvent, excitation wavelength, emission measurement range, emission-maximum wavelength, fluorescence intensity, slit width, blank, presence or absence of a quencher, and other information.
Because fluorescence intensity changes readily depending on instrument conditions, it is important to clearly state the measurement conditions.

Main Items to Include in the Results

  • Sample name
  • Type of fluorescent substance
  • Sample concentration
  • Dilution factor
  • Solvent
  • pH
  • Excitation wavelength
  • Emission measurement range
  • Emission-maximum wavelength
  • Maximum fluorescence intensity
  • Excitation spectrum
  • Emission spectrum
  • Slit width
  • Integration time
  • Blank measurement
  • Presence or absence of a quencher
  • Relationship between concentration and fluorescence intensity
  • Sources of error and points for improvement

Example of How to Write the Results:
The sample was excited at the specified excitation wavelength, and the emission spectrum was measured.
As a result, a fluorescence maximum was observed at a specific emission wavelength, and the fluorescence intensity changed as the concentration increased.
In addition, the fluorescence intensity decreased in the sample to which a quencher was added, suggesting that intermolecular interactions or a quenching process were involved.

Reference Experimental Values and Analysis Examples for Fluorescence Spectra

Here, excitation wavelength, emission wavelength, fluorescence intensity, concentration dependence, and the effects of quenching obtained from fluorescence-spectrum measurements are organized using reference experimental values.

In fluorescence measurement, a sample is irradiated with light of a specific wavelength and the fluorescence emitted from the sample is measured.
Changing the excitation wavelength changes the fluorescence intensity, and the emission-maximum wavelength can be read from the emission spectrum.
In addition, if the concentration is too high or a quencher is present, the fluorescence intensity may decrease.

Reference Experimental Conditions

Item Details
Measurement target Quinine sulfate aqueous solution, fluorescein aqueous solution, unknown sample
Measurement method Fluorescence spectrophotometry
Excitation wavelength Quinine: 350 nm, Fluorescein: 490 nm
Measurement range Emission wavelength 380–650 nm
Slit width Excitation side 5 nm, emission side 5 nm
Cell Quartz cell, optical path length 1 cm
Evaluation items Excitation wavelength, emission maximum, fluorescence intensity, calibration curve, quenching, inner-filter effect

Main Items Examined in Fluorescence Measurement

Item Meaning How to Use It in the Discussion
Excitation wavelength Wavelength of the light irradiated onto the sample Examine at which wavelength fluorescence is produced most efficiently
Emission wavelength Wavelength of fluorescence emitted from the sample Consider the characteristics of the fluorescent substance from the emission-maximum wavelength
Fluorescence intensity Strength of fluorescence Evaluate the effects of concentration, quenching, and measurement conditions
Stokes shift Difference between excitation wavelength and emission wavelength Shows that energy is lost after absorption and emission occurs on the longer-wavelength side
Quenching Phenomenon in which fluorescence becomes weaker Discuss the effects of quenchers, concentration, oxygen, pH, and other factors

Changes in Fluorescence Intensity With Excitation Wavelength

A reference example is shown in which the excitation wavelength of a quinine sulfate aqueous solution was changed and the fluorescence intensity near the emission maximum was measured.

Excitation Wavelength Emission-Maximum Wavelength Fluorescence Intensity How to Interpret the Result
300 nm 450 nm 180 Weak
320 nm 450 nm 430 Becomes stronger
340 nm 450 nm 780 High
350 nm 450 nm 920 Strongest
360 nm 450 nm 860 Slight decrease
380 nm 450 nm 520 Decreases

In this reference example, the strongest fluorescence is observed at an excitation wavelength of 350 nm.
The closer the excitation wavelength is to a wavelength that the sample readily absorbs, the greater the fluorescence intensity is considered to become.

Example Measurement of an Emission Spectrum

This is a reference example in which quinine sulfate was excited at an excitation wavelength of 350 nm and the fluorescence intensity was measured while changing the emission wavelength.

Emission Wavelength Fluorescence Intensity How to Interpret the Result
390 nm 120 Beginning of emission
410 nm 340 Intensity increases
430 nm 710 Strong emission
450 nm 920 Emission maximum
470 nm 760 Begins to decrease
500 nm 430 Decreases toward the longer-wavelength side
540 nm 140 Weak

The emission intensity reaches a maximum near 450 nm.
This wavelength can be treated as the emission-maximum wavelength.

Example Calculation of the Stokes Shift

The Stokes shift can be expressed simply as the difference between the excitation wavelength and the emission-maximum wavelength.

Stokes shift = Emission-maximum wavelength − Excitation wavelength

For quinine sulfate, the excitation wavelength is 350 nm and the emission-maximum wavelength is 450 nm.

Stokes shift = 450 − 350 = 100 nm

Fluorescence is normally observed on the longer-wavelength side of the excitation light.
This is because part of the energy is lost as heat or molecular vibration after excitation before light is emitted.

Relationship Between Concentration and Fluorescence Intensity

In the low-concentration range, fluorescence intensity tends to be proportional to concentration, making quantitation using a calibration curve possible.
A measurement example using quinine sulfate standard solutions is shown below.

Standard Solution Concentration Fluorescence Intensity How to Interpret the Result
Standard 1 0.010 mg/L 92 Low concentration
Standard 2 0.020 mg/L 184 Approximately double
Standard 3 0.050 mg/L 462 Within the linear range
Standard 4 0.080 mg/L 735 Within the linear range
Standard 5 0.100 mg/L 918 Within the linear range

In this reference example, the relationship between concentration and fluorescence intensity is treated as the following calibration curve.

Fluorescence intensity = 9200 × Concentration (mg/L)

Therefore, the concentration of the unknown sample is determined using the following equation.

Concentration (mg/L) = Fluorescence intensity ÷ 9200

Example Calculation of the Concentration of an Unknown Sample

If the fluorescence intensity of unknown sample A is 552, the concentration is determined using the calibration curve.

Concentration = 552 ÷ 9200 = 0.060 mg/L

Therefore, the concentration of quinine sulfate in unknown sample A is determined to be 0.060 mg/L.

Example Calculation Including the Dilution Factor

If the sample is diluted before measurement, the concentration in the measured solution is multiplied by the dilution factor to obtain the concentration in the original sample.

Condition Fluorescence Intensity Concentration in Measured Solution Dilution Factor Concentration in Original Sample
No dilution 552 0.060 mg/L 0.060 mg/L
5-fold dilution 368 0.040 mg/L 0.200 mg/L
10-fold dilution 460 0.050 mg/L 10× 0.500 mg/L

For samples measured after dilution, forgetting to apply the dilution factor results in underestimation of the concentration in the original sample.

Decrease in Fluorescence Intensity at High Concentration

Fluorescence intensity is proportional to concentration at low concentrations, but may deviate from the proportional relationship at high concentrations.
This is caused by concentration quenching, the inner-filter effect, and other factors.

Concentration Theoretically Expected Intensity Measured Fluorescence Intensity How to Interpret the Result
0.05 mg/L 460 462 Within the linear range
0.10 mg/L 920 918 Within the linear range
0.20 mg/L 1840 1650 Slightly lower
0.50 mg/L 4600 2850 Large decrease
1.00 mg/L 9200 3100 Strong quenching / inner-filter effect

At high concentrations, the excitation light may be absorbed too strongly near the surface of the sample, or the generated fluorescence may be reabsorbed, causing the measured fluorescence intensity to be lower than the expected value.
Quantitation is performed within a concentration range in which linearity has been confirmed.

Fluorescence Quenching Caused by Addition of a Quencher

Adding a quencher to a fluorescent substance may reduce the fluorescence intensity.
Here, a reference example in which iodide ions were added as a quencher is shown.

Quencher Concentration Fluorescence Intensity I0/I How to Interpret the Result
0 mmol/L 920 1.00 No quenching
1 mmol/L 820 1.12 Slight quenching
2 mmol/L 735 1.25 Quenching progresses
5 mmol/L 560 1.64 Large decrease
10 mmol/L 390 2.36 Strong quenching

The fluorescence intensity decreases as the quencher concentration increases.
This is considered to be because fluorescent molecules in the excited state interacted with the quencher and were deactivated without emitting light.

Example Calculation of the Quenching Percentage

The quenching percentage indicates how much the fluorescence intensity decreased relative to the fluorescence intensity before the quencher was added.

Quenching percentage (%) = (I0 − I) ÷ I0 × 100

If the fluorescence intensity without a quencher, I0, is 920 and the fluorescence intensity after addition of 5 mmol/L, I, is 560,

Quenching percentage = (920 − 560) ÷ 920 × 100 = 39.1%

Therefore, the addition of 5 mmol/L of quencher reduced the fluorescence intensity by approximately 39%.

Changes in Fluorescence Intensity With pH

Because the structure and ionization state of a fluorescent substance change with pH, the fluorescence intensity and emission wavelength may also change.
A reference example for fluorescein aqueous solution is shown below.

pH Emission-Maximum Wavelength Fluorescence Intensity How to Interpret the Result
3 515 nm 80 Weak under acidic conditions
5 516 nm 320 Slight increase
7 518 nm 940 Strong fluorescence
9 520 nm 1120 Strongest
11 522 nm 760 Decrease

Because fluorescence intensity changes greatly with pH, it is important to keep pH constant during fluorescence measurements.

Changes in Emission Wavelength Caused by the Solvent

Fluorescence spectra may be affected by solvent polarity and hydrogen bonding.
A reference example in which the same fluorescent substance was measured in different solvents is shown below.

Solvent Excitation Wavelength Emission-Maximum Wavelength Fluorescence Intensity How to Interpret the Result
Hexane 340 nm 405 nm 620 Low-polarity solvent
Ethanol 340 nm 425 nm 780 Slightly toward longer wavelengths
Water 340 nm 438 nm 690 Polar solvent
Acetonitrile 340 nm 418 nm 850 Strong fluorescence

When the solvent changes, the emission-maximum wavelength and fluorescence intensity may also change.
This is considered to be because the ways in which the excited state and ground state are stabilized differ among solvents.

Changes in Fluorescence Intensity With Temperature

As the temperature increases, molecular motion becomes more active and nonradiative deactivation increases, so fluorescence intensity may decrease.

Temperature Fluorescence Intensity Percentage Relative to 25°C How to Interpret the Result
10°C 1030 112% Strong at low temperature
25°C 920 100% Reference
40°C 760 83% Decrease
60°C 520 57% Large decrease

Because the fluorescence intensity decreases as the temperature increases, the measurement temperature must be kept constant.

Example of Blank Correction

Background signals may arise from the solvent, cell, or scattered light.
To determine the fluorescence intensity accurately, the blank value is subtracted.

Sample Measured Fluorescence Intensity Blank Intensity Corrected Intensity How to Interpret the Result
Standard solution 948 28 920 Use the corrected intensity
Unknown sample A 580 28 552 Substitute into the calibration curve
Colored sample 690 75 615 Large blank

In samples with a large blank, whether correction is performed may greatly affect the quantitative value.

Changes in Fluorescence Intensity Caused by Measurement Conditions

Fluorescence intensity is also affected by instrument conditions.
In particular, changing the slit width or the photomultiplier-tube voltage changes the measured intensity.

Condition Fluorescence Intensity Effect Direction of Discussion
Slit width 2.5 nm 460 Low light intensity Peak is sharp but sensitivity is low
Slit width 5 nm 920 Standard conditions Balance between sensitivity and resolution
Slit width 10 nm 1780 High light intensity High sensitivity but broader peaks
Increase PMT voltage 1450 Signal increases Be careful of saturation if too high

If data obtained under different measurement conditions are compared directly, differences in instrument conditions rather than differences in concentration or sample may be observed.

Example of How to Write the Results

When the excitation wavelength of the quinine sulfate aqueous solution was changed and the fluorescence intensity was measured, the strongest fluorescence was observed at an excitation wavelength of 350 nm.
When the emission spectrum was measured under these conditions, an emission maximum was observed near 450 nm.
From the difference between the excitation wavelength of 350 nm and the emission-maximum wavelength of 450 nm, the Stokes shift was 100 nm.

When the relationship between the concentration of the standard solutions and fluorescence intensity was examined, the fluorescence intensity was approximately proportional to concentration in the range of 0.010–0.100 mg/L.
The calibration curve was expressed as “Fluorescence intensity = 9200 × Concentration,” and substituting the corrected fluorescence intensity of 552 for unknown sample A gave a concentration of 0.060 mg/L.

On the other hand, in high-concentration samples, the measured fluorescence intensity was lower than the value expected from the concentration.
This was considered to be because excitation light and fluorescence were absorbed within the sample because of concentration quenching and the inner-filter effect.
Therefore, quantitation by fluorescence must be performed within a concentration range in which linearity has been confirmed.

Points for Connecting the Results to the Discussion

In a discussion of fluorescence spectra, it is important to relate not only the magnitude of fluorescence intensity but also excitation wavelength, emission wavelength, concentration, quenching, and measurement conditions.

  • Can the reason fluorescence intensity changes with excitation wavelength be explained in relation to ease of absorption?
  • Has the emission-maximum wavelength been read and the Stokes shift calculated?
  • Can it be explained that fluorescence intensity is proportional to concentration in the low-concentration range?
  • Has the concentration of the unknown sample been determined from the calibration curve?
  • If the sample was diluted before measurement, has the dilution factor been correctly taken into account?
  • Can the decrease in fluorescence intensity at high concentration be explained in relation to concentration quenching and the inner-filter effect?
  • Can the decrease in fluorescence caused by addition of a quencher be explained as a quenching phenomenon?
  • Can the effects of pH, solvent, and temperature on fluorescence intensity and emission wavelength be discussed?
  • Can the need for blank correction and standardization of instrument conditions be explained?

Example Discussion

In this experiment, the fluorescence spectrum of a quinine sulfate aqueous solution was measured using fluorescence spectrophotometry.
When the excitation wavelength was changed, the fluorescence intensity reached a maximum at 350 nm.
This was considered to be because light near 350 nm was efficiently absorbed by quinine sulfate and many excited states were generated.

When the emission spectrum was measured at an excitation wavelength of 350 nm, an emission maximum was observed near 450 nm.
The emission wavelength was on the longer-wavelength side of the excitation wavelength because the molecule lost part of its energy as heat or vibration after excitation before emitting light.
The difference between the excitation wavelength and emission wavelength is called the Stokes shift, and it was 100 nm in this experiment.

In the relationship between concentration and fluorescence intensity, a good proportional relationship was observed in the range of 0.010–0.100 mg/L.
Within this range, the fluorescence intensity is considered to be proportional to the concentration of the fluorescent substance.
However, at concentrations of 0.20 mg/L or higher, the measured values were lower than the expected intensities.
This was considered to be due to the inner-filter effect, in which excitation light is absorbed excessively within the sample at higher concentrations and the generated fluorescence is reabsorbed.

When iodide ions were added as a quencher, the fluorescence intensity decreased as the concentration increased.
The quenching percentage at 5 mmol/L was 39.1%, suggesting that the excited state was deactivated without emitting light because of collision or interaction with the quencher.
This result shows that fluorescence intensity is strongly affected not only by the concentration of the fluorescent substance but also by coexisting substances.

The effects of pH and temperature were also large.
For fluorescein, fluorescence intensity changed greatly depending on pH, while an increase in temperature reduced the fluorescence intensity.
This was considered to be caused by changes in the ionization state of the molecules and the proportion of nonradiative deactivation.
Therefore, in fluorescence measurement, it is important to keep conditions such as pH, temperature, solvent, slit width, and PMT voltage constant and to perform blank correction.

Summary

In fluorescence spectra, the properties and concentration of fluorescent substances can be evaluated by reading the excitation wavelength, emission-maximum wavelength, and fluorescence intensity.
Because fluorescence intensity tends to be proportional to concentration at low concentrations, quantitation using a calibration curve is possible.

This reference example dealt with excitation wavelength, emission spectra, Stokes shift, calibration curves, concentration quenching, quenchers, pH, solvent, temperature, and blank correction using quinine sulfate and fluorescein as examples.
In a report, it is useful to discuss changes in fluorescence intensity in relation to concentration, molecular state, coexisting substances, and measurement conditions.

What Is Excitation Wavelength?

Excitation wavelength is the wavelength of light irradiated onto a sample to move molecules into an excited state.
In fluorescence measurements, a wavelength that the molecule absorbs strongly is often selected as the excitation wavelength.
If the excitation wavelength is inappropriate, the molecules may not be sufficiently excited and the fluorescence intensity may become weak.

The excitation wavelength is selected with reference to a UV-Vis absorption spectrum or excitation spectrum.
Excitation near the absorption maximum generally tends to produce strong fluorescence.
However, the absorption maximum itself is not always used because scattering of excitation light, Raman scattering, and sample decomposition may need to be avoided.

Example Discussion:
Excitation wavelength is the wavelength of light irradiated to move molecules into an excited state.
In this experiment, a wavelength at which the sample sufficiently absorbed light was selected as the excitation wavelength, so a clear fluorescence peak was considered to have been observed.
On the other hand, if the excitation wavelength is in a region where absorption is weak, fewer molecules are excited and the fluorescence intensity may decrease.

What Are Emission Wavelength and Emission Maximum?

Emission wavelength is the wavelength of light emitted by an excited molecule.
In an emission spectrum, the wavelength at which the fluorescence intensity is greatest is called the emission-maximum wavelength.
The emission maximum reflects the energy difference between the excited state and ground state of a molecule.

Emission wavelength changes depending on molecular structure, conjugated systems, solvent polarity, pH, intermolecular interactions, aggregation state, and other factors.
If the emission maximum is close to a literature value or that of a standard substance, it provides evidence for the presence of the target fluorescent substance.
On the other hand, if the emission wavelength shifts, the effects of environmental changes or impurities must be considered.

Example Discussion:
Because a fluorescence maximum was observed at a specific wavelength in the emission spectrum, fluorescent molecules in the sample were considered to have emitted light when returning from the excited state to the ground state.
The emission-maximum wavelength reflects the electronic state of the molecule and its surrounding environment.
If an emission wavelength close to the literature value is obtained, the result supports the presence of the target component.

What Is Fluorescence Intensity?

Fluorescence intensity is a value representing the strength of fluorescence emitted from a sample.
Fluorescence intensity is affected by the number of molecules excited, fluorescence quantum yield, concentration, excitation-light intensity, slit width, detector sensitivity, solvent environment, and presence or absence of quenching.
Therefore, measurement conditions must be kept the same when fluorescence intensities are compared.

In the low-concentration range, fluorescence intensity tends to be proportional to concentration.
However, at high concentrations, fluorescence intensity may deviate from proportionality because of the inner-filter effect, self-absorption, concentration quenching, molecular aggregation, and other factors.

Example Discussion:
Fluorescence intensity reflects the amount of light emitted as fluorescence by excited molecules.
In the low-concentration range, as the concentration increases, the number of molecules that can be excited increases, so fluorescence intensity tends to increase.
However, at high concentrations, the inner-filter effect and concentration quenching may occur, causing fluorescence intensity to no longer be proportional to concentration.

Difference Between Excitation Spectra and Emission Spectra

An emission spectrum is measured by fixing the excitation wavelength and changing the emission wavelength.
It is used to confirm which wavelengths of fluorescence are being emitted.
In contrast, an excitation spectrum is measured by fixing the emission wavelength to be observed and changing the excitation wavelength.
It makes it possible to determine which excitation wavelengths produce strong fluorescence.

An excitation spectrum often corresponds to the absorption characteristics of the component producing fluorescence.
However, it may not completely agree with the UV-Vis absorption spectrum because of instrument characteristics, concentration, scattering, or the presence of multiple components.

Example Discussion:
An emission spectrum makes it possible to determine which wavelengths of fluorescence the sample emits at a fixed excitation wavelength.
In contrast, an excitation spectrum makes it possible to evaluate which excitation wavelengths are effective for producing fluorescence at a fixed emission wavelength.
If the excitation spectrum resembles the absorption spectrum, this provides evidence that the absorbed light is involved in fluorescence emission.

Discussion of the Stokes Shift

The Stokes shift represents the difference between the absorption or excitation wavelength and the emission wavelength.
In many cases, the emission wavelength appears on the longer-wavelength side of the excitation wavelength.
This is because the excited molecule loses part of its energy through vibrational relaxation or solvent relaxation before emitting light.

If the Stokes shift is large, it becomes easier to distinguish the excitation light from the fluorescence.
On the other hand, if the Stokes shift is small, scattering of excitation light and the emission peak are more likely to overlap, which may make measurement difficult.

Example Discussion:
Because the emission maximum was observed on the longer-wavelength side of the excitation wavelength, a Stokes shift was considered to have occurred.
This is because a molecule in the excited state loses part of its energy through vibrational relaxation or solvent relaxation before emitting light.
If the Stokes shift is large, scattering of excitation light and the fluorescence peak can be separated more easily, increasing the reliability of measurement.

Relationship Between Concentration and Fluorescence Intensity

In fluorescence analysis, fluorescence intensity is often proportional to concentration in the low-concentration range.
As the concentration increases, the number of molecules that can be excited also increases, so the fluorescence intensity becomes greater.
This relationship can be used to prepare a calibration curve from standard solutions and determine the concentration of an unknown sample.

However, fluorescence intensity may decrease or level off at high concentrations.
Possible causes include the inner-filter effect, self-absorption, concentration quenching, molecular aggregation, and excessive absorption of excitation light.
Therefore, selection of the measurement-concentration range is extremely important in fluorescence quantitation.

Example Discussion:
In the low-concentration region, the fluorescence intensity increased as the concentration increased.
This was considered to be because the number of molecules that absorbed excitation light and emitted fluorescence increased.
On the other hand, if the fluorescence intensity deviates from proportionality in the high-concentration region, fluorescence may not have been detected efficiently because of the inner-filter effect or concentration quenching.

Discussion of Fluorescence Calibration Curves

In fluorescence quantitation, standard solutions of known concentration are measured and the relationship between concentration and fluorescence intensity is expressed as a calibration curve.
Within the range in which the calibration curve shows linearity, the concentration can be determined from the fluorescence intensity of an unknown sample.
Because fluorescence methods are highly sensitive, they are suitable for quantitation of low-concentration samples.

However, fluorescence intensity is readily affected by measurement conditions, so standard solutions and unknown samples must be measured using the same excitation wavelength, emission wavelength, slit width, cell, and solvent conditions.
If the fluorescence intensity of the unknown sample is outside the calibration-curve range, dilution or concentration should be considered.

Example Discussion:
Because the concentration of the standard solutions and fluorescence intensity showed a good linear relationship in the low-concentration range, quantitation using fluorescence intensity was considered possible within this range.
If the fluorescence intensity of the unknown sample is within the calibration-curve range, the concentration can be determined by interpolation, so the reliability of the quantitative result is high.
However, on the high-concentration side, deviation from the line may occur because of the inner-filter effect or quenching.

What Is Quenching?

Quenching is a phenomenon in which the emission intensity of a fluorescent substance decreases.
Quenching occurs when fluorescent molecules lose energy from the excited state without emitting light, or when excitation light or fluorescence is absorbed by another substance.
Oxygen, halide ions, metal ions, increased concentration, molecular aggregation, and changes in pH may cause quenching.

Types of quenching include dynamic quenching, static quenching, concentration quenching, oxygen quenching, and apparent decreases in intensity caused by the inner-filter effect.
In a report, rather than simply writing that fluorescence became weaker, the possible quenching mechanism should be explained.

Example Discussion:
Because the fluorescence intensity decreased in the sample to which a quencher was added, the excited state of the fluorescent molecule may have been deactivated before emitting light.
Quenching may occur through dynamic quenching caused by collisions between fluorescent molecules and a quencher or through static quenching caused by formation of a nonfluorescent complex.
Therefore, a decrease in fluorescence intensity provides a clue to interactions between fluorescent molecules and surrounding molecules.

Discussion of Dynamic Quenching

Dynamic quenching is a phenomenon in which a fluorescent molecule in the excited state collides with a quencher and loses energy without emitting light.
As the concentration of the quencher increases, the frequency of collisions increases, so the fluorescence intensity tends to decrease.
Quenching by oxygen may be treated as a representative example of dynamic quenching.

A characteristic of dynamic quenching is that the fluorescence lifetime becomes shorter.
However, fluorescence lifetime is often not measured in ordinary student experiments, so care must be taken not to conclude too strongly that dynamic quenching occurred based on intensity changes alone.

Example Discussion:
Dynamic quenching may explain the decrease in fluorescence intensity as the quencher concentration increased.
In dynamic quenching, an excited fluorescent molecule collides with a quencher and is deactivated nonradiatively before emitting light.
Therefore, as the quencher concentration increases, the collision frequency increases and the fluorescence intensity is considered to decrease.

Discussion of Static Quenching

Static quenching is a phenomenon in which a fluorescent molecule and quencher form a nonfluorescent complex in the ground state, making fluorescence less likely to occur.
In this case, the number of molecules capable of emitting fluorescence decreases, so the overall fluorescence intensity decreases.
Static quenching may occur through binding with metal ions or specific molecules.

In static quenching, changes may also appear in the absorption spectrum.
Because complex formation may change the position or intensity of absorption peaks, combining the discussion with UV-Vis measurements is useful.

Example Discussion:
One possible cause of the decrease in fluorescence intensity is formation of a nonfluorescent complex between the fluorescent molecule and the quencher.
In this type of static quenching, the number of free molecules capable of emitting fluorescence decreases, so the observed fluorescence intensity becomes smaller.
If changes are also observed in the absorption spectrum, they provide evidence supporting complex formation.

Quenching by Oxygen

Oxygen may act as a quencher for many fluorescent substances.
Dissolved oxygen in a solution interacts with fluorescent molecules in the excited state and promotes nonradiative deactivation.
As a result, the fluorescence intensity may differ between a degassed sample and an air-saturated sample.

Methods for reducing the effects of oxygen quenching include degassing with nitrogen or argon, using a sealed cell, and standardizing the measurement conditions.
However, because degassing is often not performed in student experiments, the effect of oxygen may be discussed as a source of error.

Example Discussion:
Quenching by dissolved oxygen in the solution may explain why the fluorescence intensity was lower than expected.
Oxygen can interact with fluorescent molecules in the excited state and promote deactivation processes that do not emit light.
Therefore, if the oxygen concentration differs among samples, differences in fluorescence intensity may occur even for fluorescent substances at the same concentration.

Discussion of Concentration Quenching

Concentration quenching is a phenomenon in which fluorescence intensity decreases as the concentration of the fluorescent substance increases.
At high concentrations, the distance between molecules becomes smaller, making transfer of excitation energy, molecular aggregation, self-absorption, and nonradiative deactivation more likely.
As a result, increasing the concentration may fail to increase fluorescence intensity and may instead reduce it.

In fluorescence quantitation, it is important to prepare the calibration curve in a low-concentration range where concentration quenching does not occur.
High-concentration samples must be diluted before measurement.

Example Discussion:
Concentration quenching may explain the decrease in fluorescence intensity in the high-concentration sample.
As the concentration increases, fluorescent molecules become closer together and excitation energy is more readily lost through nonradiative processes.
In addition, molecular aggregation and self-absorption also become more likely, so fluorescence intensity no longer remains proportional to concentration.

Discussion of the Inner-Filter Effect

The inner-filter effect is a phenomenon in which the observed fluorescence intensity decreases because the sample itself absorbs the excitation light or emitted fluorescence.
In high-concentration samples, the excitation light has difficulty reaching deep into the cell, making it impossible to excite all molecules uniformly.
In addition, the emitted fluorescence may be reabsorbed in the sample before reaching the detector.

The inner-filter effect is a major cause of fluorescence intensity no longer being proportional to concentration.
Countermeasures include diluting the sample, measuring in a range with low absorbance, shortening the cell path length, and selecting an appropriate excitation wavelength.

Example Discussion:
The inner-filter effect may explain why the fluorescence intensity of the high-concentration sample was lower than expected.
When the sample concentration is high, excitation light is strongly absorbed within the sample, making it impossible to excite the entire cell uniformly.
In addition, the emitted fluorescence may be reabsorbed by the sample itself, reducing the observed fluorescence intensity.

Discussion of Self-Absorption

Self-absorption is a phenomenon in which a fluorescent substance reabsorbs its own emitted light.
If the absorption spectrum and emission spectrum overlap, emitted fluorescence is more readily absorbed by other molecules in the sample at high concentrations.
As a result, the observed emission intensity or shape of the emission spectrum may change.

When self-absorption occurs, emission on the shorter-wavelength side is particularly likely to be absorbed, and the spectrum may appear to shift toward longer wavelengths.
When comparing fluorescence spectra at different concentrations, the presence or absence of self-absorption must be considered.

Example Discussion:
Self-absorption may explain the change in the shape of the emission spectrum in the high-concentration sample.
If the absorption spectrum and emission spectrum overlap, emitted fluorescence is reabsorbed by other molecules in the sample.
As a result, the fluorescence intensity may decrease, or emission on the shorter-wavelength side may weaken and the spectral shape may change.

Effect of pH

For some fluorescent substances, the emission intensity and emission wavelength change depending on pH.
When pH changes, the protonation state and charge state of the molecule change, altering its electronic state and molecular structure.
As a result, fluorescence may become stronger or weaker, or the emission wavelength may shift.

pH dependence is particularly important for fluorescent indicators and biomolecules.
When comparing concentrations by fluorescence measurement, pH must be kept constant.
If samples with different pH values are compared, fluorescence intensity may change because of differences in protonation state rather than differences in concentration.

Example Discussion:
The change in fluorescence intensity with pH may have been caused by a change in the protonation state of the fluorescent molecule.
The protonated and deprotonated forms have different electronic states, and their emission efficiency and emission wavelength from the excited state may also differ.
Therefore, it is important to keep pH constant in fluorescence measurements.

Effect of the Solvent

Fluorescence spectra are affected by solvent polarity, viscosity, hydrogen-bonding ability, dielectric constant, and other factors.
The excited state may be stabilized more strongly by the solvent than the ground state, causing the emission wavelength to shift toward longer wavelengths.
Some fluorescent substances show a red shift in emission as solvent polarity increases.

In addition, if the solvent viscosity is high, nonradiative deactivation caused by molecular rotation and vibration may be suppressed, increasing fluorescence intensity.
Conversely, if the solvent interacts strongly with the fluorescent molecule, quenching may occur.

Example Discussion:
Differences in solvent polarity and hydrogen-bonding ability may explain why the emission wavelength and fluorescence intensity changed when the solvent was changed.
If the excited state is stabilized more strongly in a polar solvent, the emission energy becomes smaller and the emission may shift toward longer wavelengths.
In addition, if interactions with the solvent promote nonradiative deactivation, the fluorescence intensity may decrease.

Effect of Temperature

Fluorescence intensity may be affected by temperature.
In general, as the temperature increases, molecular motion becomes more active and nonradiative deactivation caused by collisions and vibrations increases, so fluorescence intensity may decrease.
This may also be considered thermal quenching.

Changes in temperature also alter solvent viscosity, molecular aggregation, reaction rates, and the frequency of collisions with quenchers.
Therefore, it is important to keep the measurement temperature constant in experiments that compare fluorescence intensity.

Example Discussion:
If fluorescence intensity decreases as the temperature increases, increased thermal motion may have promoted nonradiative deactivation.
At higher temperatures, collisions and vibrations between molecules increase, making it easier for excited-state energy to be lost before being emitted as light.
Therefore, the measurement temperature must be kept constant when fluorescence intensities are compared.

Discussion When Fluorescence Intensity Increases

Causes of increased fluorescence intensity include an increase in fluorescent-substance concentration, optimization of the excitation wavelength, an increase in fluorescence quantum yield, suppression of nonradiative deactivation, complex formation, molecular rigidification, and an increase in solvent viscosity.
When molecular motion is restricted, energy is less readily lost as heat and fluorescence may become stronger.

However, it is risky to explain an increase in fluorescence intensity solely by concentration.
It is necessary to check whether the measurement conditions, excitation-light intensity, slit width, cell condition, and solvent environment have changed.

Example Discussion:
One possible reason fluorescence intensity increased is that the concentration of the fluorescent substance increased and the number of molecules that could be excited became larger.
In addition, when molecular motion is restricted, nonradiative deactivation may be suppressed and the proportion emitted as fluorescence may increase.
However, because fluorescence intensity also depends on instrument conditions, conditions such as excitation wavelength and slit width must be standardized for comparison.

Discussion When Fluorescence Intensity Decreases

Causes of low fluorescence intensity include low concentration, an inappropriate excitation wavelength, quenching, the inner-filter effect, sample decomposition, self-absorption of emitted light, inappropriate solvent or pH, and a dirty cell.
Fluorescence is highly sensitive, but it is also strongly affected by the environment, so multiple possible causes must be considered.

At low concentrations, the signal is small and the effect of noise becomes greater.
On the other hand, even at high concentrations, fluorescence may appear weak because of quenching or the inner-filter effect.
Therefore, it is important to confirm the concentration range.

Example Discussion:
Possible reasons the fluorescence intensity was lower than expected include the excitation wavelength being shifted from the absorption maximum and the occurrence of quenching.
In addition, in high-concentration samples, the inner-filter effect and self-absorption may make it difficult for fluorescence that is actually generated to reach the detector.
Therefore, a decrease in fluorescence intensity must be discussed not only in terms of insufficient concentration but also measurement conditions and quenching processes.

Discussion of Scattering Peaks

In a fluorescence spectrum, scattering of excitation light rather than fluorescence may appear as a peak.
Rayleigh scattering appears near the same wavelength as the excitation wavelength, while Raman scattering appears at a position slightly shifted from the excitation wavelength.
It is important not to mistake these for fluorescence peaks.

Scattering may become stronger because of the solvent, cell, fine particles in the sample, or turbidity.
If a sharp peak appears near the excitation wavelength in the emission spectrum, the possibility of scattering rather than fluorescence should be considered.

Example Discussion:
If a sharp peak is observed near the excitation wavelength, it may originate from Rayleigh scattering rather than fluorescence.
Raman scattering originating from the solvent may also appear in the emission spectrum.
Therefore, when assigning fluorescence peaks, it is necessary to compare them with the excitation wavelength and blank spectrum and distinguish scattering peaks.

Discussion of Blank Measurements

In fluorescence measurements, a blank measurement is performed to confirm fluorescence or scattering originating from the solvent, cell, or reagents.
If fluorescence or scattering is present in the blank, its effect may also be included in the sample spectrum.
Particularly for low-concentration samples, the effect of the blank becomes large.

Blank correction makes it possible to evaluate fluorescence originating from the target component more accurately.
However, if the solvent and reagent conditions of the blank and sample do not match, correction may be insufficient.

Example Discussion:
Blank measurement is necessary to confirm fluorescence and scattering originating from the solvent, cell, and reagents.
If the blank signal is large, the fluorescence intensity of the sample may be overestimated.
Therefore, it is important to measure a blank under the same solvent and reagent conditions as the sample and distinguish fluorescence originating from the target component.

Effects of the Cell and Measurement Conditions

In fluorescence measurements, dirt, scratches, fingerprints, bubbles, and differences in the orientation of the cell affect the intensity.
In addition, changing the excitation slit width, emission slit width, integration time, detector sensitivity, or excitation-light intensity also changes the fluorescence intensity.
Therefore, measurement conditions must always be kept the same when fluorescence intensities are compared.

In fluorescence spectra, the absolute intensity readily depends on instrument conditions, so it is risky to directly compare intensities measured under different conditions.
In a report, the measurement conditions should be clearly stated and the validity of the intensity comparison explained.

Example Discussion:
Possible causes of variation in fluorescence intensity include dirt or bubbles in the cell and differences in slit width.
Because fluorescence intensity depends strongly on instrument conditions, it is difficult to compare samples unless the excitation wavelength, emission wavelength, slit width, and integration time are standardized.
Therefore, measurement conditions must be kept constant when fluorescence intensities are compared.

When Fluorescence-Spectrum Results Can Be Considered Good

Fluorescence-spectrum results can be considered good when the emission peak is clear, can be distinguished from the blank and scattering peaks, and the emission maximum agrees with that of a standard solution measured under the same conditions or with a literature value.
In quantitative experiments, it is important that concentration and fluorescence intensity show a linear relationship in the low-concentration range and that the unknown sample be within the calibration-curve range.

In addition, if the sample contains no turbidity or precipitate and the measurement is performed at a concentration where the inner-filter effect and concentration quenching are unlikely to occur, the result is more readily judged to be reliable.

Example Discussion:
In this experiment, a clear emission peak was observed in the sample and a fluorescence signal different from the blank spectrum was confirmed.
In addition, the concentration of the standard solutions and fluorescence intensity showed a linear relationship in the low-concentration range, so quantitation using the calibration curve was considered generally valid.
If the fluorescence intensity of the unknown sample is within the calibration-curve range, the reliability of the quantitative result is relatively high.

Example Discussion When the Experiment Did Not Go Well

When fluorescence measurement does not go well, possible causes are considered from results such as weak fluorescence, no visible peak, large scattering, lack of proportionality between concentration and intensity, a large blank, an emission wavelength different from the literature value, or quenching.
Organizing the causes into sample concentration, excitation wavelength, solvent, pH, oxygen, turbidity, cell condition, and instrument conditions makes the discussion easier.

Example Discussion:
In this experiment, the fluorescence intensity of the high-concentration sample was lower than expected.
Possible causes include the inner-filter effect and concentration quenching.
At high concentrations, excitation light is strongly absorbed within the sample, preventing uniform excitation of the entire sample, and the generated fluorescence may also be reabsorbed.
Therefore, for more accurate measurement, the sample must be diluted and measured within a range in which fluorescence intensity is proportional to concentration.

How to Write Points for Improvement

In a discussion of fluorescence spectra, including not only sources of error but also points for improvement makes the report easier to organize.
Improvements can be organized by dividing them into sample preparation, concentration range, measurement conditions, quenching countermeasures, and analysis methods.

Improvements to Sample Preparation

  • Dissolve the sample completely
  • Remove turbidity and precipitates
  • Perform filtration or centrifugation when necessary
  • Adjust the concentration appropriately
  • Keep pH constant
  • Avoid sample decomposition

Improvements to Measurement Conditions

  • Select an appropriate excitation wavelength
  • Use a sufficiently wide emission measurement range
  • Keep the slit width constant
  • Use the same integration time
  • Keep the cell clean
  • Remove bubbles
  • Measure a blank

Improvements Related to Quenching and Concentration

  • Dilute high-concentration samples
  • Measure within a range where the inner-filter effect is small
  • Consider degassing if oxygen quenching is a problem
  • Avoid contamination by quenchers
  • Keep the temperature constant
  • Compare under the same solvent conditions

Improvements to Analysis

  • Compare with the blank spectrum
  • Distinguish scattering peaks from fluorescence peaks
  • Read the emission-maximum wavelength accurately
  • Confirm the linear range of the calibration curve
  • Check the solvent and pH when comparing with literature values

Example of How to Write Points for Improvement:
To improve the reproducibility of fluorescence measurements, it is necessary to keep the excitation wavelength, emission-wavelength range, slit width, and integration time constant.
In addition, because the inner-filter effect and concentration quenching readily occur in high-concentration samples, it is important to dilute them appropriately and measure within the linear range.
By performing a blank measurement and distinguishing scattering peaks and fluorescence originating from the solvent, fluorescence from the target component can be evaluated more accurately.

Difference Between a Superficial Discussion and a Good Discussion

In a discussion of fluorescence spectra, simply writing that “fluorescence was observed” or “the intensity decreased” results in a superficial discussion.
A good discussion relates excitation wavelength, emission maximum, fluorescence intensity, concentration, quenching, inner-filter effect, and measurement conditions.

Superficial Discussion Good Discussion
A fluorescence peak appeared. Because molecules that absorbed excitation light emitted light when returning from the excited state to the ground state, an emission peak was considered to have been observed. The emission-maximum wavelength reflects the electronic state of the molecule and its surrounding environment.
Fluorescence was stronger at higher concentration. In the low-concentration range, the number of molecules that can be excited increases as the concentration increases, so the fluorescence intensity was considered to have increased.
The fluorescence became weaker. The decrease in fluorescence intensity may have been caused by interaction with a quencher, oxygen quenching, the inner-filter effect, concentration quenching, sample decomposition, or other factors.
The peak shifted. Possible causes of the change in the emission-maximum wavelength include solvent polarity, pH, molecular aggregation, complex formation, and changes in the surrounding environment.

Examples of Expressions That Can Be Used in Reports

The following expressions can be used when writing the results and discussion of fluorescence spectra.
Adjust the necessary parts according to your own experimental results.

  • Fluorescence is a phenomenon in which molecules in an excited state emit light when returning to the ground state.
  • The emission-maximum wavelength reflects the electronic state of the fluorescent molecule and its surrounding environment.
  • The closer the excitation wavelength is to a region of strong absorption, the greater the fluorescence intensity tends to become.
  • In the low-concentration range, fluorescence intensity increases in proportion to concentration.
  • At high concentrations, fluorescence intensity may no longer be proportional to concentration because of the inner-filter effect and concentration quenching.
  • Because fluorescence intensity decreased after addition of a quencher, the excited state of the fluorescent molecule may have been deactivated nonradiatively.
  • Oxygen may quench the excited state of a fluorescent molecule.
  • Changes in solvent or pH may alter the electronic state and emission efficiency of a fluorescent molecule.
  • A sharp peak near the excitation wavelength may originate from scattering rather than fluorescence.
  • To compare fluorescence intensities, measurement conditions such as excitation wavelength, slit width, and integration time must be kept the same.

Points to Check When Discussing Fluorescence Spectra

Checking the following points before writing the report makes the discussion easier to write.

  • Is the excitation wavelength clearly stated?
  • Is the emission measurement range stated?
  • Has the emission-maximum wavelength been recorded?
  • Has the maximum fluorescence intensity been recorded?
  • Has the sample been compared with the blank spectrum?
  • Have scattering peaks been distinguished from fluorescence peaks?
  • Has the relationship between concentration and fluorescence intensity been explained?
  • Has the linear range of the calibration curve been confirmed?
  • Have possible causes of quenching been considered?
  • Have the inner-filter effect and self-absorption been considered?
  • Have the effects of solvent, pH, temperature, and oxygen been considered?
  • Do the points for improvement correspond to the sources of error?

Summary

Fluorescence spectroscopy is an analytical method in which light emitted when excited molecules return to the ground state is measured and the emission wavelength and fluorescence intensity are evaluated.
Excitation wavelength is the wavelength of light used to excite molecules, while the emission-maximum wavelength is the wavelength at which the molecule emits fluorescence most strongly.
Fluorescence intensity is affected by concentration, excitation efficiency, fluorescence quantum yield, quenching, solvent environment, and measurement conditions.

In the low-concentration range, fluorescence intensity tends to be proportional to concentration, making quantitation using a calibration curve possible.
However, at high concentrations, fluorescence intensity may no longer be proportional to concentration because of the inner-filter effect, self-absorption, concentration quenching, molecular aggregation, and other factors.
In addition, oxygen, metal ions, halide ions, changes in pH, and changes in temperature can also cause quenching or changes in emission wavelength.

In a report, rather than simply writing that “fluorescence was observed” or “the intensity decreased,” organize and discuss the excitation wavelength, emission maximum, Stokes shift, concentration dependence, quenching mechanism, inner-filter effect, scattering peaks, and blank correction.
In fluorescence measurements, appropriately standardizing sample concentration and measurement conditions is important for obtaining reliable results.